\(\renewcommand{\AA}{\text{Å}}\)

fix ipi command

Syntax

fix ID group-ID ipi address port [unix] [reset]

  • ID, group-ID are documented in fix command

  • ipi = style name of this fix command

  • address = internet address (FQDN or IP), or UNIX socket name

  • port = port number (ignored for UNIX sockets)

  • zero or more keywords may be appended

  • keyword = unix or reset

    unix args = none = use a unix socket
reset args = none = reset electrostatics at each call

Examples

fix 1 all ipi my.server.com 12345
fix 1 all ipi mysocket 666 unix reset

Description

This fix enables LAMMPS to be run as a client for the i-PI Python wrapper (IPI) for performing a path integral molecular dynamics (PIMD) simulation. The philosophy behind i-PI is described in the following publication (IPI-CPC).

A version of the i-PI package, containing only files needed for use with LAMMPS, is provided in the tools/i-pi directory. See the tools/i-pi/manual.pdf for an introduction to i-PI. The examples/PACKAGES/i-pi directory contains example scripts for using i-PI with LAMMPS.

In brief, the path integral molecular dynamics is performed by the Python wrapper, while the client (LAMMPS in this case) simply computes forces and energy for each configuration. The communication between the two components takes place using sockets, and is reduced to the bare minimum. All the parameters of the dynamics are specified in the input of i-PI, and all the parameters of the force field must be specified as LAMMPS inputs, preceding the fix ipi command.

The server address must be specified by the address argument, and can be either the IP address, the fully-qualified name of the server, or the name of a UNIX socket for local, faster communication. In the case of internet sockets, the port argument specifies the port number on which i-PI is listening, while the unix optional switch specifies that the socket is a UNIX socket.

Note that there is no check of data integrity, or that the atomic configurations make sense. It is assumed that the species in the i-PI input are listed in the same order as in the data file of LAMMPS. The initial configuration is ignored, as it will be substituted with the coordinates received from i-PI before forces are ever evaluated.

A note of caution when using potentials that contain long-range electrostatics, or that contain parameters that depend on box size: all of these options will be initialized based on the cell size in the LAMMPS-side initial configuration and kept constant during the run. This is required to e.g. obtain reproducible and conserved forces. If the cell varies too wildly, it may be advisable to re-initialize these interactions at each call. This behavior can be requested by setting the reset switch.

Restart, fix_modify, output, run start/stop, minimize info

There is no restart information associated with this fix, since all the dynamical parameters are dealt with by i-PI.

Restrictions

Using this fix on anything other than all atoms requires particular care, since i-PI will know nothing on atoms that are not those whose coordinates are transferred. However, one could use this strategy to define an external potential acting on the atoms that are moved by i-PI.

Since the i-PI code uses atomic units internally, this fix needs to convert LAMMPS data to and from its specified units accordingly when communicating with i-PI. This is not possible for reduced units (“units lj”) and thus fix ipi will stop with an error in this case.

This fix is part of the MISC package. It is only enabled if LAMMPS was built with that package. See the Build package page for more info. Because of the use of UNIX domain sockets, this fix will only work in a UNIX environment.